26 episodesFirst aired 29 July 2006
E1Jul 200621m
The Turtles and Splinter find themselves in a futuristic world after accidentally being pulled through a time window.
E2Aug 200621m
The Turtles use new technology to create new weapons in an effort to escape the future.
E3Aug 200621m
A computer virus traps the Turtles inside the Dojo and they must fight for their lives.
E4Sept 200621m
Raph competes in a professional wrestling tournament, which is interrupted by a banned wrestler looking to prove himself.
E5Oct 200621m
Mikey is excited when a video game sequel is released; the Turtles need a guide to navigate the mall.
E6Oct 200621m
The Turtles find out that Agent Bishop is alive in the year 2105.
E7Oct 200621m
Mikey brings Cody and his three friends to a horror film festival, where they meet Sh'okanabo face to face.
E8Oct 200621m
Mikey discovers that someone has taken his old superhero persona, Turtle Titan.
E9Nov 200621m
Cody and the Turtles search for a rare alloy on the moon; Inuwashi Gunjin goes there to make sure they do not return alive.
E10Nov 200621m
Jammerhead uses the Bodyjacker to take over Darius Dun's body to steal O'Neil Tech's secrets.
E11Nov 200621m
Sh'Okanabo implants gene seeds in Mikey, beginning his first test of introducing the seeds into the general population.
E12Dec 200621m
The Turtles' psychotic clones try to prove that they are bigger, badder and better than the Turtles.
E13Dec 200621m
The Turtles come across April and Casey's old future-history journal.
E14Dec 200621m
Viral sets a trap that digitizes and sucks the Turtles into a prototype game system, the Gaminator.
E15Mar 200721m
Splinter announces that the Turtles will graduate to the next ninja rank, except Michelangelo.
Mar 200721m
Sh'Okanabo unleashes a time storm on New York, putting the Turtles in the middle of chaos.
Apr 200721m
Jammerhead escapes from prison and confronts the Turtles during a visit from Starlee's alien family.
Apr 200721m
An intergalactic mercenary enlists the Turtles' help in smuggling a ship full of humanitarian aid past Triceraton gangsters.
Apr 200721m
When Cody uncovers a secret weapons-manufacturing program, he and his uncle have a showdown over who will ultimately control the O'Neilltech empire.
Apr 200721m
Darius Dunn controls Turtle X to exact revenge on his nephew and the Turtles.
Sept 200721m
Triple Threat crashes a cross-country road race and steals all the cars.
Sept 200721m
The Turtles must rescue the president before he loses his head to a sinister figure from their past.
Oct 200721m
Dark Leo tries to prove himself by destroying the Turtles from within.
Oct 200721m
The leader of Inawashi Gunjin asks the turtles for help with a malicious alien.
Oct 200721m
When the entire population of Moonbase Bishop goes missing and the Turtles stage an assault on the base, they find a bigger Sh'Okanabo with an army of drones.
Oct 200721m
Torbin Zixx persuades the turtles to help him recover an experimental matter transmitter.
